{ "_id": "6ace305ba14063b82c3b1009", "Package": "rCausalMGM", "Type": "Package", "Title": "Scalable Causal Discovery and Model Selection on Mixed Datasets\nwith 'rCausalMGM'", "Version": "1.0.1", "Date": "2026-03-13", "Author": "Tyler C Lovelace [aut], Max Dudek [aut], Jack Fiore [aut],\nPanayiotis V Benos [aut, cre]", "Authors@R": "c(person(given = c(\"Tyler\", \"C\"),\nfamily = \"Lovelace\",\nrole = \"aut\"),\nperson(given = \"Max\",\nfamily = \"Dudek\",\nrole = \"aut\"),\nperson(given = \"Jack\",\nfamily = \"Fiore\",\nrole = \"aut\"),\nperson(given = c(\"Panayiotis\", \"V\"),\nfamily = \"Benos\",\nrole = c(\"aut\", \"cre\"),\nemail = \"pbenos@ufl.edu\"))", "Maintainer": "Panayiotis V Benos ", "Description": "Scalable methods for learning causal graphical models from\nmixed data, including continuous, discrete, and censored\nvariables. The package implements CausalMGM, which combines a\nconvex, score-based approach for learning an initial moralized\ngraph with a producer-consumer scheme that enables efficient\nparallel conditional independence testing in constraint-based\ncausal discovery algorithms. The implementation supports\nhigh-dimensional datasets and provides individual access to\ncore components of the workflow, including MGM and the\nPC-Stable and FCI-Stable causal discovery algorithms. To\nsupport practical applications, the package includes multiple\nmodel selection strategies, including information criteria\nbased on likelihood and model complexity, cross-validation for\nout-of-sample likelihood estimation, and stability-based\napproaches that assess graph robustness across subsamples.", "License": "GPL-3", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-13 12:34:18 UTC", "User": "root" }, "Repository": "https://pbenos-uf.r-universe.dev", "Date/Publication": "2026-03-13 19:00:02 UTC", "RemoteUrl": "https://github.com/cran/rCausalMGM", "RemoteRef": "HEAD", "RemoteSha": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "_user": "pbenos-uf", "_type": "src", "_file": "rCausalMGM_1.0.1.tar.gz", "_fileid": "https://r2.ropensci.org/940f61eb1b32f05316538a3f4dc9789552845ed41a35b8f219b7638afda824b8", "_filesize": 472079, "_sha256": "940f61eb1b32f05316538a3f4dc9789552845ed41a35b8f219b7638afda824b8", "_expires": "2027-01-21T13:21:29.000Z", "_created": "2026-10-13T12:34:18.000Z", "_published": "2026-10-13T13:21:31.274Z", "_buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 115301457562, "time": 410, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11814972155" }, { "job": 115301457509, "time": 497, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11812874631" }, { "job": 115301457463, "time": 392, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11814628035" }, { "job": 115301457554, "time": 470, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11814937889" }, { "job": 115301457467, "time": 422, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11816277890" }, { "job": 115301457438, "time": 986, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11816398417" }, { "job": 115301457450, "time": 495, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11815953390" }, { "job": 115301457887, "time": 1006, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11817340193" }, { "job": 115297970318, "time": 490, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11814931381" }, { "job": 115301457317, "time": 316, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11814962141" }, { "job": 115301457781, "time": 754, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11814829011" }, { "job": 115301458176, "time": 656, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11813969081" }, { "job": 115301457601, "time": 554, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11813948686" }, { "job": 115301457814, "time": 748, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11814194236" }, { "job": 115301457492, "time": 390, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11814418129" } ], "_upstream": "https://github.com/cran/rCausalMGM", "_commit": { "id": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "author": "Panayiotis V Benos ", "committer": "cran-robot ", "message": "version 1.0.1\n", "time": 1773428402 }, "_maintainer": { "name": "Panayiotis V Benos", "email": "pbenos@ufl.edu", "login": "pbenos-uf", "description": "", "uuid": 341612437 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "BH", "role": "LinkingTo" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "RcppThread", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 1.0.3", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "Rgraphviz", "role": "Suggests" }, { "package": "graph", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-10", "n": 1 }, { "week": "2026-11", "n": 1 } ], "_tags": [ { "name": "1.0", "date": "2026-03-03" }, { "name": "1.0.1", "date": "2026-03-13" } ], "_stars": 0, "_contributors": [ { "user": "pbenos-uf", "count": 2, "uuid": 341612437 } ], "_userbio": { "uuid": 341612437, "type": "user", "name": "pbenos-uf", "followers": 0 }, "_downloads": { "count": 360, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rCausalMGM" }, "_searchresults": 28, "_topics": [ "openblas", "cpp", "openmp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/rCausalMGM.html", "extra/readme.html", "extra/readme.md" ], "_realowner": "pbenos-uf", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2026-03-03" }, { "version": "1.0.1", "date": "2026-03-13" } ], "_exports": [ "adjMat2Graph", "allMetrics", "bootstrap", "boss", "coxmgm", "coxmgmCV", "coxmgmPath", "cpdag", "createKnowledge", "fciCV", "fciStable", "fciStars", "graphTable", "grasp", "growShrinkMB", "loadGraph", "mgm", "mgmCV", "mgmfciCV", "mgmPath", "mgmpcCV", "moral", "pag", "pcCV", "pcStable", "pcStars", "plot.graph", "plot.graphCV", "plot.graphPath", "plot.graphSTARS", "plot.graphSTEPS", "print.graph", "print.graphCV", "print.graphPath", "print.graphSTARS", "print.graphSTEPS", "print.knowledge", "printGraph", "prMetrics", "prMetricsAdjacency", "prMetricsCausal", "prMetricsOrientation", "saveGraph", "SHD", "simRandomDAG", "skeleton", "steps" ], "_help": [ { "page": "adjMat2Graph", "title": "Convert an adjacency matrix into a graph", "topics": [ "adjMat2Graph" ] }, { "page": "allMetrics", "title": "Combined graph recovery metrics", "topics": [ "allMetrics" ] }, { "page": "bootstrap", "title": "Runs bootstrapping for a causal graph on the dataset.", "topics": [ "bootstrap" ] }, { "page": "boss", "title": "Runs the BOSS causal discovery algorithm on the dataset", "topics": [ "boss" ] }, { "page": "coxmgm", "title": "Calculate the CoxMGM graph on a dataset.", "topics": [ "coxmgm" ] }, { "page": "coxmgmCV", "title": "Implements k-fold cross-validation for CoxMGM", "topics": [ "coxmgmCV" ] }, { "page": "coxmgmPath", "title": "Estimates a solution path for CoxMGM", "topics": [ "coxmgmPath" ] }, { "page": "cpdag", "title": "Calculate the CPDAG for a given DAG", "topics": [ "cpdag" ] }, { "page": "createKnowledge", "title": "A function to create a prior knowledge object for use with causal discovery algorithms", "topics": [ "createKnowledge" ] }, { "page": "fciCV", "title": "Implements k-fold cross-validation for FCI-Stable", "topics": [ "fciCV" ] }, { "page": "fciStable", "title": "Runs the causal discovery algorithm FCI-Stable on a dataset.", "topics": [ "fciStable" ] }, { "page": "fciStars", "title": "Implements StARS for FCI-Stable", "topics": [ "fciStars" ] }, { "page": "graphTable", "title": "A function to generate a data.frame for objects from graph class. It incorporates adjacency and orientation frequency if estimates of edge stability are available.", "topics": [ "graphTable" ] }, { "page": "grasp", "title": "Runs the GRaSP causal discovery algorithm on the dataset", "topics": [ "grasp" ] }, { "page": "growShrinkMB", "title": "Implements Grow-Shrink algorithm for Markov blanket identification", "topics": [ "growShrinkMB" ] }, { "page": "loadGraph", "title": "Load a graph from a \".txt\" file", "topics": [ "loadGraph" ] }, { "page": "mgm", "title": "Calculate the Mixed Graphical Model (MGM) graph on a dataset.", "topics": [ "mgm" ] }, { "page": "mgmCV", "title": "Implements k-fold cross-validation for MGM", "topics": [ "mgmCV" ] }, { "page": "mgmfciCV", "title": "Implements k-fold cross-validation for MGM-FCI-Stable", "topics": [ "mgmfciCV" ] }, { "page": "mgmPath", "title": "Estimates a solution path for MGM", "topics": [ "mgmPath" ] }, { "page": "mgmpcCV", "title": "Implements k-fold cross-validation for MGM-PC-Stable", "topics": [ "mgmpcCV" ] }, { "page": "moral", "title": "Calculate the moral graph for a given DAG", "topics": [ "moral" ] }, { "page": "pag", "title": "Calculate the PAG for a given DAG and set of latent variables", "topics": [ "pag" ] }, { "page": "pcCV", "title": "Implements k-fold cross-validation for PC-Stable", "topics": [ "pcCV" ] }, { "page": "pcStable", "title": "Runs the causal discovery algorithm PC-Stable on a dataset.", "topics": [ "pcStable" ] }, { "page": "pcStars", "title": "Implements StARS for PC-Stable", "topics": [ "pcStars" ] }, { "page": "plot.graph", "title": "A plot override function for the graph class", "topics": [ "plot.graph" ] }, { "page": "plot.graphCV", "title": "A plot override function for the graphCV class", "topics": [ "plot.graphCV" ] }, { "page": "plot.graphPath", "title": "A plot override function for the graphPath class", "topics": [ "plot.graphPath" ] }, { "page": "plot.graphSTARS", "title": "A plot override function for the graphSTARS class", "topics": [ "plot.graphSTARS" ] }, { "page": "plot.graphSTEPS", "title": "A plot override function for the graphSTEPS class", "topics": [ "plot.graphSTEPS" ] }, { "page": "print.graph", "title": "A print override function for the graph class", "topics": [ "print.graph" ] }, { "page": "print.graphCV", "title": "A print override function for the graphCV class", "topics": [ "print.graphCV" ] }, { "page": "print.graphPath", "title": "A print override function for the graphPath class", "topics": [ "print.graphPath" ] }, { "page": "print.graphSTARS", "title": "A print override function for the graphSTARS class", "topics": [ "print.graphSTARS" ] }, { "page": "print.graphSTEPS", "title": "A print override function for the graphSTEPS class", "topics": [ "print.graphSTEPS" ] }, { "page": "print.knowledge", "title": "A print override function for the knowledge class", "topics": [ "print.knowledge" ] }, { "page": "printGraph", "title": "Display a graph object as text.", "topics": [ "printGraph" ] }, { "page": "prMetrics", "title": "Combined adjaceny and orientation precision-recall metrics", "topics": [ "prMetrics" ] }, { "page": "prMetricsAdjacency", "title": "Adjacency Precision-Recall Metrics", "topics": [ "prMetricsAdjacency" ] }, { "page": "prMetricsCausal", "title": "Causal Orientaion Precision-Recall Metrics for CPDAGs", "topics": [ "prMetricsCausal" ] }, { "page": "prMetricsOrientation", "title": "Orientation Precision-Recall Metrics", "topics": [ "prMetricsOrientation" ] }, { "page": "saveGraph", "title": "Save a graph to a file. Supported file types are \".txt\" and \".sif\".", "topics": [ "saveGraph" ] }, { "page": "SHD", "title": "Structural Hamming Distance (SHD)", "topics": [ "SHD" ] }, { "page": "simRandomDAG", "title": "A function to simulate a random forward DAG from a SEM model.", "topics": [ "simRandomDAG" ] }, { "page": "skeleton", "title": "Calculate the undirected skeleton for a given DAG", "topics": [ "skeleton" ] }, { "page": "steps", "title": "Implements StEPS and StARS for MGM", "topics": [ "steps" ] } ], "_readme": "https://github.com/cran/rCausalMGM/raw/HEAD/README.md", "_rundeps": [ "BH", "lattice", "Matrix", "Rcpp", "RcppArmadillo", "RcppThread", "survival" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.32+ds-5", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.32+ds-5", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_score": 2.4471580313422194, "_indexed": true, "_nocasepkg": "rcausalmgm", "_universes": [ "pbenos-uf" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-10-13T12:41:46.000Z", "distro": "resolute", "arch": "aarch64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/2471e550ae19361d0c92122fd5685064271216ac3995b2501dfc6e9ffc8a89cf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-10-13T12:42:19.000Z", "distro": "resolute", "arch": "x86_64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/e88855cbbdd9d941540df75f3ef6df11fdd79f0c804bb6993b2e9eff50cd0da2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.6.1", "os": "linux", "version": "1.0.1", "date": "2026-10-13T12:41:44.000Z", "distro": "resolute", "arch": "aarch64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/97830d749333011d2e03635592f8b8b41f93732fda57281d487a95124b00c6b9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.6.1", "os": "linux", "version": "1.0.1", "date": "2026-10-13T12:42:10.000Z", "distro": "resolute", "arch": "x86_64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/1b76435fc0c56ba1835a90882549873741ab684564de7a15a21a66b9a8d5541a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.5.3", "os": "mac", "version": "1.0.1", "date": "2026-10-13T13:07:12.000Z", "arch": "aarch64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/cfd334851887800f458a6dc978eb0347e4ddae6d47c110bad2ebbea15efca207", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.5.3", "os": "mac", "version": "1.0.1", "date": "2026-10-13T13:08:57.000Z", "arch": "x86_64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/6fb6b92f977f2b9870faf0ef4284f1ca3acc34019ffab7c2272f74b0ae431a5e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.6.1", "os": "mac", "version": "1.0.1", "date": "2026-10-13T13:08:40.000Z", "arch": "aarch64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/c651a73e540b944e56d3d0943e4899dfff1b6f2fff9be0d0e3e1bc6dab1669cc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.6.1", "os": "mac", "version": "1.0.1", "date": "2026-10-13T13:08:25.000Z", "arch": "x86_64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/562a7d700e04c9ab02075ab5e63f9e9422a0ea87b19a25006b1da50abf6ef9c1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.1", "date": "2026-10-13T12:41:47.000Z", "arch": "emscripten", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/d1d167a54f50f65c8b1ded400d21100407df2a5067360d43d320146ee6534cc1", "status": "success", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.7.0", "os": "win", "version": "1.0.1", "date": "2026-10-13T12:45:21.000Z", "arch": "aarch64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/b6daa4e6b65af83ee3ab2d0493c09605bdbf95ccc8c6fd5574c54041bec138aa", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.7.0", "os": "win", "version": "1.0.1", "date": "2026-10-13T12:41:19.000Z", "arch": "x86_64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/3730462333ceeee052b9029252755bb1dc9edd05cc3e7ef973ff9092c15733f6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.5.3", "os": "win", "version": "1.0.1", "date": "2026-10-13T12:41:17.000Z", "arch": "x86_64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/b3a96e85421379106a84400df25d626587d0434513315f28e43bcb848e74eba4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.6.1", "os": "win", "version": "1.0.1", "date": "2026-10-13T12:45:13.000Z", "arch": "aarch64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/53d150b9bf0e1ab2a4a11aa249d798beb73c4072b8a2b3ce1c6a24e2e88eca80", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" }, { "r": "4.6.1", "os": "win", "version": "1.0.1", "date": "2026-10-13T12:41:04.000Z", "arch": "x86_64", "commit": "9e0101244c379a33a1329dfdcb6b9ffcb01fb0d4", "fileid": "https://r2.ropensci.org/0f029607210b228d847176d8b89d1363a48fdb8425ac751cd8c09a60ecbe0742", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pbenos-uf/actions/runs/38397934072" } ] }